BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027D07SP1|AL428718
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1599 1370 0.0
3x_Contig526 247 2e-65
>3x_Contig1599
Length = 10178
Score = 1370 bits (687), Expect = 0.0
Identities = 702/711 (98%), Gaps = 1/711 (0%)
Strand = Plus / Plus
Query: 173 atatttttcaaggcttcaaattcgtcccaatgtaaaattggcgattttaaaactaaacga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatttttcaaggcttcaaattcgtcccaatgtaaaattggcgattttaaaactaaacga 60
Query: 233 tcgcwttgagaaggatgcatttccaaaaggttcccttgaggtcctacgaaacattccaag 292
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 tcgcattgagaaggatgcatttccaaaag-ttcccttgaggtcctacgaaacattccaag 119
Query: 293 gacatgacgttggcctcacgaattggatcaattggagggtttgtcacctgggcgaaaagc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gacatgacgttggcctcacgaattggatcaattggagggtttgtcacctgggcgaaaagc 179
Query: 353 tctctgadataatcatataatagtactgggtcttcatttagacaagccaatggagcatca 412
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tctctgaaataatcatataatagtactgggtcttcatttagacaagccaatggagcatca 239
Query: 413 ttacccatggdtcctagagcttccttacctccaagcgccattggtacaaggdtcatcgaa 472
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 240 ttacccatggatcctagagcttccttacctccaagcgccattggtacaaggatcatcgaa 299
Query: 473 acctgttcatatgtgtatcctaatgccaatagccttggatcagtttgagctttcaagtta 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acctgttcatatgtgtatcctaatgccaatagccttggatcagtttgagctttcaagtta 359
Query: 533 taatctgadatgaaacttggcggtaagaatttggaagtcttctctaacacatcttccact 592
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taatctgaaatgaaacttggcggtaagaatttggaagtcttctctaacacatcttccact 419
Query: 593 ttwataacttttgataaccacgacttgaaatcctttctcttggcgaacttatgctttaat 652
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttaataacttttgataaccacgacttgaaatcctttctcttggcgaacttatgctttaat 479
Query: 653 tgctttgtgtcgaccatttctccagattccgtatcaactagcaacatatcacctggtttc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgctttgtgtcgaccatttctccagattccgtatcaactagcaacatatcacctggtttc 539
Query: 713 aacttacccttctgaatgaccaatgaattctccacaggaataacaccgacttctgawcca 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 540 aacttacccttctgaatgaccaatgaattctccacaggaataacaccgacttctgaacca 599
Query: 773 caaatgacacggtcatcggatgtwatatagtaacggcatggtcttaaaccgttcctgtcc 832
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 600 caaatgacacggtcatcggatgtaatatagtaacggcatggtcttaaaccgttcctgtcc 659
Query: 833 aaagtggcaccagtgaagcgaccatcagtgaaggttagcaaagctggacca 883
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaagtggcaccagtgaagcgaccatcagtgaaggttagcaaagctggacca 710
>3x_Contig526
Length = 2622
Score = 247 bits (124), Expect = 2e-65
Identities = 131/132 (99%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 1 atccgcagataacagtctgtcgctaatgaacaaaatcttctttccttgatcaatagcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 atccgcagataacagtctgtcgctaatgaacaaaatcttctttccttgatcaatagcatc 72
Query: 61 actggcttcctgtgtgattctgtcaatggtagccgtgtagcctaatagaccttcttcttt 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 actggcttcctgtgt-attctgtcaatggtagccgtgtagcctaatagaccttcttcttt 13
Query: 121 agggaaagtaat 132
||||||||||||
Sbjct: 12 agggaaagtaat 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5452
Number of Sequences: 1807
Number of extensions: 5452
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)